Package index • eDataDRF

Initialise tibbles

Create empty versions of the format’s tables as R tibble objects

initialise_CREED_data_tibble(): Initialise CREED Scores Tibble
initialise_CREED_scores_tibble(): Initialise CREED Scores Tibble
initialise_biota_tibble(): Initialise Biota Data Tibble
initialise_campaign_tibble(): Initialise Campaign Data Tibble
initialise_compartments_tibble(): Initialise Compartments Data Tibble
initialise_measurements_tibble(): Initialise Measurements Data Tibble
initialise_methods_tibble(): Initialise Methods Data Tibble
initialise_parameters_tibble(): Initialise Parameters Data Tibble
initialise_references_tibble(): Initialise References Data Tibble
initialise_samples_tibble(): Initialise Samples Data Tibble
initialise_sites_tibble(): Initialise Sites Data Tibble

Controlled vocabulary

Vectors (and sometimes tibbles) of controlled vocabulary

CREED_choices_vocabulary(): CREED Assessment Scoring Choices
altitude_units_vocabulary(): Altitude Units Controlled Vocabulary
analytical_protocols_vocabulary(): Analytical Protocol Options Vocabulary
areas_vocabulary(): Areas Controlled Vocabulary
coordinate_systems_vocabulary(): Coordinate Systems Controlled Vocabulary
countries_vocabulary(): Countries Controlled Vocabulary
dummy_parameters_vocabulary(): Dummy Parameters Data
environ_compartments_sub_vocabulary(): Sub-compartment Options Mapping
environ_compartments_vocabulary(): Environmental Compartments Controlled Vocabulary
extraction_protocols_vocabulary(): Extraction Protocol Options Vocabulary
fractionation_protocols_vocabulary(): Fractionation Protocol Options Vocabulary
gender_vocabulary(): Initialise Gender Controlled Vocabulary
geographic_features_sub_vocabulary(): Geographic Features Sub Controlled Vocabulary
geographic_features_vocabulary(): Geographic Features Controlled Vocabulary
lifestage_vocabulary(): Initialise Life Stages Controlled Vocabulary
measured_categories_vocabulary(): Measured Categories Controlled Vocabulary
measured_flags_vocabulary(): Measurement Flags Controlled Vocabulary
measured_types_vocabulary(): Measured Types Controlled Vocabulary
parameter_types_sub_vocabulary(): Parameter Types Sub Controlled Vocabulary
parameter_types_vocabulary(): Parameter Types Controlled Vocabulary
parameter_unit_vocabulary(): Read in ecotoxicological units and conversion factors from csv
protocol_categories_vocabulary(): Protocol Categories Controlled Vocabulary
protocol_options_vocabulary(): Protocol Options Data
sampling_protocols_vocabulary(): Sampling Protocol Options Vocabulary
species_groups_vocabulary(): Species Groups Controlled Vocabulary
species_names_vocabulary(): Species Controlled Vocabulary
tissue_types_vocabulary(): Initialise Tissue Types Controlled Vocabulary
uncertainty_types_vocabulary(): Uncertainty Types Controlled Vocabulary

Character limits

We should perhaps have more than one of these, eh?

reference_character_limits(): reference_character_limits

Generate IDs

Generate ID strings based on abbreviated titles

abbreviate_string(): Abbreviate string to first n words with case formatting
generate_reference_id(): Generate Reference ID
generate_protocol_id(): Generate Protocol ID —-

Export

Export tables as zipped CSV files

get_dataset_display_name(): Get Dataset Display Name
export_campaign_zip(): Export Multiple Datasets as ZIP of CSV Files