Validate all eData tables at once

Applies pointblank validation rules to all supplied eData tables by calling the individual table validation functions. Required tables are always validated; optional tables are validated only when provided.

Usage

pb_validate_all_edata_tables(
  campaign,
  reference,
  parameters,
  sites,
  samples = NULL,
  biota = NULL,
  measurements,
  methods = NULL,
  creed_scores = NULL,
  actions = action_levels(),
  agent = TRUE,
  northern_hemisphere = FALSE
)

Arguments

campaign

Data frame containing Campaign table data to validate

reference

Data frame containing Reference table data to validate

parameters

Data frame containing Parameters table data to validate

sites

Data frame containing Sites table data to validate

samples

Data frame containing Samples table data to validate (optional)

biota

Data frame containing Biota table data to validate (optional)

measurements

Data frame containing Measurements table data to validate

methods

Data frame containing Methods table data to validate (optional)

creed_scores

Data frame containing CREED Scores table data to validate (optional)

actions

Action levels for pointblank agents (only used when agent = TRUE)

agent

Logical. If TRUE (default), returns a list of pointblank agent objects. If FALSE, returns a list of validated data frames with failures removed.

northern_hemisphere

Logical. If TRUE, check that site coordinates are in the northern hemisphere. Passed to pb_validate_sites().

Value

A named list. If agent = TRUE, each element is a pointblank agent object. If agent = FALSE, each element is a validated data frame with failing rows removed. The list always contains elements named campaign, reference, parameters, sites, and measurements. Optional elements (samples, biota, methods, creed_scores) are included only when the corresponding arguments are not NULL.

Details

Calls each individual table validation function in turn. Validation is performed using pointblank::create_agent() and related functions.

See also

pb_validate_campaign(), pb_validate_reference(), pb_validate_parameters(), pb_validate_sites(), pb_validate_samples(), pb_validate_biota(), pb_validate_measurements(), pb_validate_methods(), pb_validate_CREED_scores(), example_campaign_tibble(), example_references_tibble(), example_parameters_tibble(), example_sites_tibble(), example_measurements_tibble()

Other validation: pb_validate_CREED_data_relevance(), pb_validate_CREED_data_reliability(), pb_validate_CREED_scores(), pb_validate_biota(), pb_validate_campaign(), pb_validate_edata_table(), pb_validate_measurements(), pb_validate_methods(), pb_validate_parameters(), pb_validate_reference(), pb_validate_samples(), pb_validate_sites()

Examples

if (FALSE) { # \dontrun{
agents <- pb_validate_all_edata_tables(
  campaign     = example_campaign_tibble(),
  reference    = example_references_tibble(),
  parameters   = example_parameters_tibble(),
  sites        = example_sites_tibble(),
  measurements = example_measurements_tibble()
)

# Include optional tables
agents <- pb_validate_all_edata_tables(
  campaign     = example_campaign_tibble(),
  reference    = example_references_tibble(),
  parameters   = example_parameters_tibble(),
  sites        = example_sites_tibble(),
  measurements = example_measurements_tibble(),
  samples      = example_samples_tibble(),
  biota        = example_biota_tibble(),
  methods      = example_methods_tibble(),
  creed_scores = example_CREED_scores_tibble()
)
} # }