SimplyCNP
This is auto-generated documentation based on the model code in models/simplycnp_model.txt . Since the modules can be dynamically loaded with different arguments, this documentation does not necessarily reflect all use cases of the modules.
See the note on notation.
The file was generated at 2024-11-12 13:40:23.
SimplyQ land
Version: 0.5.0
File: modules/simplyq.txt
Description
This is an adaption of a hydrology module originally implemented in Python as a part of the model SimplyP, which was published as
Jackson-Blake LA, Sample JE, Wade AJ, Helliwell RC, Skeffington RA. 2017. Are our dynamic water quality models too complex? A comparison of a new parsimonious phosphorus model, SimplyP, and INCA-P. Water Resources Research, 53, 5382–5399. doi:10.1002/2016WR020132
New to version 0.5 :
- New implementation in the Mobius2 framework.
Authors: James E. Sample, Leah A. Jackson-Blake, Magnus D. Norling
External symbols
| Name | Symbol | Type |
|---|---|---|
| Soil | soil | compartment |
| Groundwater | gw | compartment |
| River | river | compartment |
| runoff_target | loc | |
| Water | water | quantity |
| Flow | flow | property |
| Potential evapotranspiration | pet | property |
| Catchment area | a_catch | par_real |
| gw_target | loc |
Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| Hydrology general | |||
| Baseflow index | bfi | ||
| Quick flow inflection point | qqinfl | mm day⁻¹ | |
| Hydrology land | Distributes like: soil | ||
| Field capacity | fc | mm | |
| Soil water time constant | tc_s | day | |
| Groundwater | Distributes like: gw | ||
| Groundwater time constant | tc_g | day | |
| Groundwater retention volume | gw_ret | mm |
State variables
Soil water volume
Location: soil.water
Unit: mm
Initial value:
\[\mathrm{fc}\]Groundwater volume
Location: gw.water
Unit: mm
Initial value:
\[\mathrm{gw\_ret}+\left(\mathrm{tc\_g}\cdot \frac{\mathrm{river}.\mathrm{water}.\mathrm{flow}}{\mathrm{a\_catch}}\rightarrow \mathrm{mm}\,\right)\]Soil water flow
Location: soil.water.flow
Unit: mm day⁻¹
Value:
\[\mathrm{rate} = \frac{\mathrm{water}-\mathrm{fc}}{\mathrm{tc\_s}} \\ \href{stdlib.html#response}{\mathrm{s\_response}}\left(\mathrm{water},\, \mathrm{fc},\, 1.01\cdot \mathrm{fc},\, 0,\, \mathrm{rate}\right)\]Fluxes
Quick flow
Source: soil.water
Target: river.water
Unit: mm day⁻¹
Value:
\[\mathrm{drylim} = 0.9 \\ \mathrm{q\_in} = \left(\mathrm{in\_flux}\left(\mathrm{water}\right)\rightarrow \mathrm{mm}\,\mathrm{day}^{-1}\,\right) \\ \mathrm{q\_in}\cdot \href{stdlib.html#response}{\mathrm{s\_response}}\left(\mathrm{water},\, \mathrm{drylim}\cdot \mathrm{fc},\, \mathrm{fc},\, 0,\, 1\right)\cdot \mathrm{atan}\left(\frac{\mathrm{q\_in}}{\mathrm{qqinfl}}\right)\cdot \frac{2}{\pi}\]Evapotranspiration
Source: soil.water
Target: out
Unit: mm day⁻¹
Value:
\[\href{stdlib.html#response}{\mathrm{s\_response}}\left(\mathrm{water},\, 0.5\cdot \mathrm{fc},\, \mathrm{fc},\, 0,\, \mathrm{pet}\right)\]Soil runoff
Source: soil.water
Target: runoff_target
Unit: mm day⁻¹
Value:
\[\mathrm{flow}\cdot \left(1-\mathrm{bfi}\right)\]Recharge
Source: soil.water
Target: gw.water
Unit: mm day⁻¹
Value:
\[\mathrm{flow}\cdot \mathrm{bfi}\]Groundwater runoff
Source: gw.water
Target: gw_target
Unit: mm day⁻¹
Value:
\[\frac{\mathrm{max}\left(0,\, \mathrm{water}-\mathrm{gw\_ret}\right)}{\mathrm{tc\_g}}\]SimplyQ river
Version: 0.5.0
File: modules/simplyq.txt
Description
The river part of SimplyQ.
Authors: Leah A. Jackson-Blake, Magnus D. Norling
External symbols
| Name | Symbol | Type |
|---|---|---|
| River | river | compartment |
| Water | water | quantity |
| Flow | flow | property |
| river_target | loc |
Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| Reach parameters | Distributes like: river | ||
| Reach slope | slope | Roughly the altitude difference between the uppermost and lowermost points divided by the length | |
| Reach length | len | m | |
| Manning’s roughness coefficient | c_mann | s m⁻¹′³ | Default of 0.04 is for clean winding natural channels. See e.g. Chow 1959 for a table of values for other channel types |
| Initial reach flow | init_flow | m³ s⁻¹ |
State variables
Reach water volume
Location: river.water
Unit: m³
Initial value:
\[\mathrm{q} = \left(\mathrm{init\_flow}\Rightarrow 1\right) \\ \mathrm{depth} = 0.349 \mathrm{m}\,\cdot \mathrm{q}^{0.34} \\ \mathrm{width} = 2.71 \mathrm{m}\,\cdot \mathrm{q}^{0.557} \\ \mathrm{width}\cdot \mathrm{depth}\cdot \mathrm{len}\]Reach flow
Location: river.water.flow
Unit: m³ s⁻¹
Value:
\[0.28 \mathrm{m}^{3}\,\mathrm{s}^{-1}\,\cdot \left(\mathrm{water}\cdot \frac{\sqrt{\mathrm{slope}}}{\mathrm{len}\cdot \mathrm{c\_mann}}\Rightarrow 1\right)^{1.5}\]Initial value:
\[\mathrm{init\_flow}\]Fluxes
Reach flow flux
Source: river.water
Target: river_target
Unit: m³ s⁻¹
Value:
\[\left(\mathrm{flow}\rightarrow \mathrm{m}^{3}\,\mathrm{s}^{-1}\,\right)\]SimplyC land
Version: 1.0.1
File: modules/simplyc.txt
Description
This is a simple dissolved organic carbon (DOC) model that has as its main assumption that temperature and SO4 deposition are the strongest drivers for soil water DOC concentration.
The main purpose of the module is to predict DOC transport from land to river. The module does not keep track of the soil organic carbon pool as a whole, and so long-term changes in soil carbon availability are not taken into account, neither are effects from vegetation disturbance.
The user can configure the soil DOC concentration to either be constant, at a (temperature- and SO4-dependent) equilibrium, or always tending toward that equilibrium with a speed set by the cdoc parameter. In the latter case, influx of clean water (precipitation or snow melt) will dilute the soil water DOC concentration for a while before it again reaches equilibrium.
The ground water DOC concentration can be set to either be constant, equal to the average of the soil water DOC concentration, or follow mass balance (transport with recharge and runoff). In the latter case, the groundwater DOC decays with a user-set half life.
Authors: Magnus D. Norling, Leah A. Jackson-Blake
External symbols
| Name | Symbol | Type |
|---|---|---|
| Atmosphere | air | compartment |
| Soil | soil | compartment |
| Groundwater | gw | compartment |
| Water | water | quantity |
| Organic carbon | oc | quantity |
| Temperature | temp | property |
Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| DOC general | |||
| Soil temperature DOC creation linear coefficient | kt1 | °C⁻¹ | |
| Soil temperature DOC creation second-order coefficient | kt2 | °C⁻² | |
| Soil DOC linear SO4 dependence | kso4 | l mg⁻¹ | |
| Baseline soil DOC dissolution rate | cdoc | mg l⁻¹ day⁻¹ | Only used if the soil DOC computation type is dynamic. |
| Soil DOC computation type | soildoc_type | Possible values: const, equilibrium, dynamic | |
| Groundwater DOC computation type | gwdoc_type | Possible values: const, soil_avg, mass_bal | |
| DOC land | Distributes like: soil | ||
| Baseline soil DOC concentration | basedoc | mg l⁻¹ | Soil water equilibrium DOC concentration when temperature is 0°C and there is no SO4. |
| DOC deep soil | Distributes like: gw | ||
| Groundwater DOC half-life | gwdochl | day | Half life of decay rate if groundwater DOC follows mass balance. |
| Groundwater DOC concentration | gwdocconc | mg l⁻¹ | Concentration if groundwater DOC is set to be constant. |
State variables
SO4 deposition
Location: air.so4
Unit: mg l⁻¹
This series is externally defined. It may be an input series.
Soil water DOC
Location: soil.water.oc
Unit: kg km⁻²
Conc. unit: mg l⁻¹
Value (concentration):
\[\begin{cases}\mathrm{basedoc} & \text{if}\;\mathrm{soildoc\_type}.\mathrm{const} \\ \mathrm{basedoc}\cdot \left(1+\left(\mathrm{kt1}+\mathrm{kt2}\cdot \mathrm{temp}\right)\cdot \mathrm{temp}-\mathrm{kso4}\cdot \mathrm{air}.\mathrm{so4}\right) & \text{if}\;\mathrm{soildoc\_type}.\mathrm{equilibrium} \\ \text{(mass balance)} & \text{otherwise}\end{cases}\]Initial value (concentration):
\[\mathrm{basedoc}\]Deep soil DOC
Location: gw.water.oc
Unit: kg km⁻²
Conc. unit: mg l⁻¹
Value (concentration):
\[\begin{cases}\mathrm{gwdocconc} & \text{if}\;\mathrm{gwdoc\_type}.\mathrm{const} \\ \mathrm{aggregate}\left(\mathrm{conc}\left(\mathrm{soil}.\mathrm{water}.\mathrm{oc}\right)\right) & \text{if}\;\mathrm{gwdoc\_type}.\mathrm{soil\_avg} \\ \text{(mass balance)} & \text{otherwise}\end{cases}\]Initial value (concentration):
\[\begin{cases}\mathrm{gwdocconc} & \text{if}\;\mathrm{gwdoc\_type}.\mathrm{const}\;\text{or}\;\mathrm{gwdoc\_type}.\mathrm{mass\_bal} \\ \mathrm{aggregate}\left(\mathrm{conc}\left(\mathrm{soil}.\mathrm{water}.\mathrm{oc}\right)\right) & \text{otherwise}\end{cases}\]Fluxes
Soil DOC production
Source: out
Target: soil.water.oc
Unit: kg km⁻² day⁻¹
Value:
\[\mathrm{max}\left(0,\, \mathrm{water}\cdot \mathrm{cdoc}\cdot \left(1+\left(\mathrm{kt1}+\mathrm{kt2}\cdot \mathrm{temp}\right)\cdot \mathrm{temp}-\mathrm{kso4}\cdot \mathrm{air}.\mathrm{so4}\right)\right)\]Soil DOC mineralization+resorption
Source: soil.water.oc
Target: out
Unit: kg km⁻² day⁻¹
Value:
\[\mathrm{oc}\cdot \frac{\mathrm{cdoc}}{\mathrm{basedoc}}\]Deep soil DOC mineralization
Source: gw.water.oc
Target: out
Unit: kg km⁻² day⁻¹
Value:
\[\mathrm{rate} = \href{stdlib.html#response}{\mathrm{hl\_to\_rate}}\left(\mathrm{gwdochl}\right) \\ \mathrm{oc}\cdot \mathrm{rate}\]SimplyC river
Version: 0.0.1
File: modules/simplyc.txt
Description
River processes for DOC.
Authors: Magnus D. Norling
External symbols
| Name | Symbol | Type |
|---|---|---|
| River | river | compartment |
| Groundwater | gw | compartment |
| Water | water | quantity |
| Organic carbon | oc | quantity |
| Temperature | temp | property |
Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| DOC river | Distributes like: river | ||
| River DOC loss rate at 20°C | r_loss | day⁻¹ | |
| River DOC loss Q10 | r_q10 |
State variables
River water DOC
Location: river.water.oc
Unit: kg
Conc. unit: mg l⁻¹
Initial value (concentration):
\[\mathrm{conc}\left(\mathrm{gw}.\mathrm{water}.\mathrm{oc}\right)\]Fluxes
River DOC loss
Source: river.water.oc
Target: out
Unit: kg day⁻¹
Value:
\[\mathrm{rate} = \href{stdlib.html#response}{\mathrm{q10\_adjust}}\left(\mathrm{r\_loss},\, 20 \mathrm{°C}\,,\, \mathrm{temp},\, \mathrm{r\_q10}\right) \\ \mathrm{oc}\cdot \mathrm{rate}\]SimplyN
Version: 0.0.5
File: modules/simplyn.txt
Description
This is a simple dissolved inorganic nitrogen (DIN) model. The main assumption in the model is that there is a semi-constant input of DIN to the soil water from deposition and fixation, while loss (plant uptake + denitrification) is temperature-dependent. The latter two are bundled in one single process.
In addition fertilizer can be added at a single day per year. The fertilizer N is added as solid, and dissolves proportionally to the amount of new water (precipitation + snow melt) entering the soil.
Authors: Leah A. Jackson-Blake, Magnus D. Norling
External symbols
| Name | Symbol | Type |
|---|---|---|
| Soil | soil | compartment |
| Groundwater | gw | compartment |
| River | river | compartment |
| Water | water | quantity |
| Inorganic nitrogen | din | quantity |
| Undissolved fertilizer nitrogen | sn | quantity |
| Temperature | temp | property |
| Total nitrogen | tn | property |
Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| DIN universal params | |||
| Soilwater DIN uptake rate at 20°C | din_immob_rate | m day⁻¹ | (name is outdated, should be changed). This represents uptake, immobilisation and denitrification. |
| Soilwater DIN uptake rate response to 10°C change (Q10) | din_immob_q10 | ||
| Groundwater DIN computation type | gw_conc_type | Possible values: const, soil_avg, mass_bal | |
| Groundwater DIN concentration | gw_din_conc | mg l⁻¹ | Only used if type is const |
| Reach denitrification rate at 20°C | reach_denit_rate | day⁻¹ | |
| (Q10) Reach denitrification rate response to 10°C change in temperature | reach_denit_q10 | ||
| Soil DIN params varying by land use | Distributes like: soil | ||
| Initial soilwater DIN concentration | sw_din_init | mg l⁻¹ | |
| Net annual DIN input to soil | net_annual_N_input | kg ha⁻¹ year⁻¹ | (name outdated, should be changed) These are the gross DIN inputs to soil disregarding fertilizer inputs. Represents atmospheric deposition and fixation. |
| Fertilizer addition day | fert_day | day | |
| Fertilizer N | fert_n | kg ha⁻¹ | |
| Fertilizer DIN release | fert_rel | mm⁻¹ | Per mm of soil water input (giving less dissolution in dry years) |
| River DIN | Distributes like: river | ||
| Reach effluent DIN inputs | eff_din | kg day⁻¹ |
State variables
Soil undissolved fertilizer N
Location: soil.sn
Unit: kg km⁻²
Soil water DIN
Location: soil.water.din
Unit: kg km⁻²
Conc. unit: mg l⁻¹
Initial value (concentration):
\[\mathrm{sw\_din\_init}\]Groundwater DIN
Location: gw.water.din
Unit: kg km⁻²
Conc. unit: mg l⁻¹
Value (concentration):
\[\begin{cases}\mathrm{gw\_din\_conc} & \text{if}\;\mathrm{gw\_conc\_type}.\mathrm{const} \\ \mathrm{aggregate}\left(\mathrm{conc}\left(\mathrm{soil}.\mathrm{water}.\mathrm{din}\right)\right) & \text{if}\;\mathrm{gw\_conc\_type}.\mathrm{soil\_avg} \\ \text{(mass balance)} & \text{otherwise}\end{cases}\]Initial value (concentration):
\[\mathrm{gw\_din\_conc}\]River water DIN
Location: river.water.din
Unit: kg
Conc. unit: mg l⁻¹
Initial value (concentration):
\[\mathrm{conc}\left(\mathrm{gw}.\mathrm{water}.\mathrm{din}\right)\]River TN
Location: river.water.tn
Unit: mg l⁻¹
Value:
\[\mathrm{conc}\left(\mathrm{din}\right)\]Fluxes
Fertilizer N addition
Source: out
Target: soil.sn
Unit: kg km⁻² day⁻¹
Value:
\[\begin{cases}\left(\mathrm{fert\_n}\cdot 1 \mathrm{day}^{-1}\,\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\mathrm{day}^{-1}\,\right) & \text{if}\;\mathrm{time}.\mathrm{day\_of\_year}=\mathrm{fert\_day} \\ 0 & \text{otherwise}\end{cases}\]Fertilizer DIN release
Source: soil.sn
Target: soil.water.din
Unit: kg km⁻² day⁻¹
Value:
\[\left(\mathrm{soil}.\mathrm{sn}\cdot \mathrm{fert\_rel}\cdot \mathrm{in\_flux}\left(\mathrm{soil}.\mathrm{water}\right)\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\mathrm{day}^{-1}\,\right)\]Non-agricultural soil water DIN addition
Source: out
Target: soil.water.din
Unit: kg km⁻² day⁻¹
Value:
\[\left(\frac{\mathrm{net\_annual\_N\_input}}{\mathrm{time}.\mathrm{days\_this\_year}}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\mathrm{day}^{-1}\,\right)\]Soil water DIN uptake
Source: soil.water.din
Target: out
Unit: kg km⁻² day⁻¹
Value:
\[\mathrm{rate} = \href{stdlib.html#response}{\mathrm{q10\_adjust}}\left(\mathrm{din\_immob\_rate},\, 20 \mathrm{°C}\,,\, \mathrm{temp},\, \mathrm{din\_immob\_q10}\right) \\ \left(\mathrm{conc}\left(\mathrm{din}\right)\cdot \mathrm{rate}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\mathrm{day}^{-1}\,\right)\]River effluent DIN
Source: out
Target: river.water.din
Unit: kg day⁻¹
Value:
\[\mathrm{eff\_din}\]River DIN denitrification loss
Source: river.water.din
Target: out
Unit: kg day⁻¹
Value:
\[\mathrm{rate} = \href{stdlib.html#response}{\mathrm{q10\_adjust}}\left(\mathrm{reach\_denit\_rate},\, 20 \mathrm{°C}\,,\, \mathrm{temp},\, \mathrm{reach\_denit\_q10}\right) \\ \mathrm{din}\cdot \mathrm{rate}\]SimplyP
Version: 0.7.0
File: modules/simplyp.txt
Description
SimplyP is a parsimonious phosphorus model. SimplyP models total dissolved phosphorous (TDP) in the soil solution using a equilibrium phosphate concentration at net zero sorption (EPC0) constant. The soil water TDP concentration tends to EPC0 with a speed dependent on a phosphorous sorption coefficient. The non-dissolved phosphorous is tracked as labile phosporous.
If dynamic EPC0 is turned on, the EPC0 will change slowly over time depending on the total amount of labile phosphorous.
For news, updates and references, see the model’s github home page
Technical implementation: The soil TDP mass is described by the ODE equation
\[d(TDPs)/dt = input - kf\cdot m\_soil\cdot (TDPs/water - epc0) - flow\cdot TDPs/water\]This equation is generally stiff (hence computationally difficult to solve). However, if we assume that flow (soil water flow) and water are approximately constant over the time step, we have an equation on the form
\[d(TDPs)/dt = (input + kf\cdot m\_soil\cdot epc0) - ((kf\cdot m\_soil + flow) / water)\cdot TDPs = a - b\cdot TDPs\]This has the exact solution
\[TDPs(t) = a/b + (TDPs(0) - a/b) \cdot exp(-b\cdot t),\]where we can insert t=1 to integrate over the time step. Solving it this way saves time by a factor of about 50-100, and has miniscule error compared to solving it with time-variable water and flow.
Now, the soil labile P mass is described by
\[d(Plab)/dt = kf\cdot m\_soil\cdot ((TDPs/water)-epc0)\]So
\[Plab(1) = Plab(0) + \int_0^1 kf\cdot m\_soil\cdot ((TDPs(t)/water) - epc0) \mathrm{d}t\]Again, assuming constant water, the integral will be
\[I = (kf\cdot m\_soil)\cdot ( (1/water)\cdot \int_0^1 TDPs(t)\mathrm{d}t - EPC0) \mathrm{d}t \\ = (kf\cdot m\_soil)\cdot ( (1/water)(a/b + (TDPs(0)-a/b)\cdot (1/b)\cdot (1 - exp(-b)) ) - EPC0) \\ = (kf\cdot m\_soil)\cdot ( (1/(water\cdot b))(a + (TDPs(0) - a/b)(1 - exp(-b)) ) - EPC0)\]SimplyP was originally implemented in Python and published as
Jackson-Blake LA, Sample JE, Wade AJ, Helliwell RC, Skeffington RA. 2017. Are our dynamic water quality models too complex? A comparison of a new parsimonious phosphorus model, SimplyP, and INCA-P. Water Resources Research, 53, 5382–5399. https://doi.org/10.1002/2016WR020132
Changelog
0.6 (First Mobius2 version):
- The model has been ported to Mobius2. Everything is solved as one large coupled ODE system, so transport between land and river and between different river sections is more precise.
0.4:
- Landscape units are dynamic and user-specified instead of hardcoded.
- Sediment and hydrology equations are factored out into separate modules (SimplyQ, SimplySed)
0.3 (First Mobius1 version):
- More realistic hydrology.
For reference, here is the original Python implementation of SimplyP, which is no longer being developed.
Authors: Leah A. Jackson-Blake, Magnus D. Norling
External symbols
| Name | Symbol | Type |
|---|---|---|
| Soil | soil | compartment |
| Groundwater | gw | compartment |
| River | river | compartment |
| Water | water | quantity |
| Inorganic phosphorous | phos | quantity |
| Labile phosphorous | plab | quantity |
| Particles | sed | quantity |
| Erosion factor | e_fact | property |
| Total phosphorous | tp | property |
| Total dissolved phosphorous | tdp | property |
| Catchment area | a_catch | par_real |
Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| P general | |||
| Dynamic EPC0, TDP and soil labile P | dyn_epc0 | ||
| Soil mass per m2 | m_soil_m2 | kg m⁻² | |
| Phosphorous sorption coefficient | kf | l mg⁻¹ | |
| Particulate P enrichment factor | pp_enrich | ||
| Soil P | Distributes like: soil | ||
| Initial soil TDP concentration and EPC0 | init_epc0 | mg l⁻¹ | |
| Initial total soil P content | init_soil_p_conc | mg kg⁻¹ | |
| Inactive soil P content | inactive_soil_p_conc | mg kg⁻¹ | |
| Net annual P input to soil | p_input | kg ha⁻¹ year⁻¹ | |
| Groundwater P | Distributes like: gw | ||
| Groundwater TDP concentration | gw_tdp | mg l⁻¹ | |
| River P | Distributes like: river | ||
| Effluent TDP inputs | eff_tdp | kg day⁻¹ |
State variables
EPC0
Location: soil.epc0
Unit: mg l⁻¹
Value:
\[\mathrm{m\_soil} = \left(\mathrm{m\_soil\_m2}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\right) \\ \begin{cases}\href{stdlib.html#basic}{\mathrm{safe\_divide}}\left(\mathrm{last}\left(\mathrm{plab}\right),\, \mathrm{kf}\cdot \mathrm{m\_soil}\right) & \text{if}\;\mathrm{dyn\_epc0} \\ \mathrm{init\_epc0} & \text{otherwise}\end{cases}\]Initial value:
\[\mathrm{init\_epc0}\]Soil DIP mass
Location: soil.water.phos
Unit: kg km⁻²
Conc. unit: mg l⁻¹
Value:
\[\begin{cases}\begin{pmatrix}\mathrm{q} = \left(\mathrm{last}\left(\mathrm{out\_flux}\left(\mathrm{soil}.\mathrm{water}\right)\right)\rightarrow \mathrm{mm}\,\mathrm{day}^{-1}\,\right) \\ \mathrm{days} = \left(\mathrm{time}.\mathrm{step\_length\_in\_seconds}\rightarrow \mathrm{day}\,\right) \\ \mathrm{pin} = \left(\mathrm{p\_input}\cdot \frac{\mathrm{days}}{\mathrm{time}.\mathrm{days\_this\_year}}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\right) \\ \mathrm{m\_soil} = \left(\mathrm{m\_soil\_m2}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\right) \\ \mathrm{a} = \mathrm{pin}+\mathrm{kf}\cdot \mathrm{m\_soil}\cdot \mathrm{epc0} \\ \mathrm{bV} = \mathrm{kf}\cdot \mathrm{m\_soil}+\mathrm{q}\cdot \mathrm{days} \\ \mathrm{b} = \frac{\mathrm{bV}}{\mathrm{last}\left(\mathrm{water}\right)} \\ \frac{\mathrm{a}}{\mathrm{b}}+\left(\mathrm{last}\left(\mathrm{water}.\mathrm{phos}\right)-\frac{\mathrm{a}}{\mathrm{b}}\right)\cdot e^{-\mathrm{b}}\end{pmatrix} & \text{if}\;\mathrm{dyn\_epc0} \\ \left(\mathrm{init\_epc0}\cdot \mathrm{water}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\right) & \text{otherwise}\end{cases}\]Initial value (concentration):
\[\mathrm{init\_epc0}\]Soil labile P mass
Location: soil.plab
Unit: kg km⁻²
Value:
\[\begin{cases}\begin{pmatrix}\mathrm{q} = \left(\mathrm{last}\left(\mathrm{out\_flux}\left(\mathrm{soil}.\mathrm{water}\right)\right)\rightarrow \mathrm{mm}\,\mathrm{day}^{-1}\,\right) \\ \mathrm{days} = \left(\mathrm{time}.\mathrm{step\_length\_in\_seconds}\rightarrow \mathrm{day}\,\right) \\ \mathrm{pin} = \left(\mathrm{p\_input}\cdot \frac{\mathrm{days}}{\mathrm{time}.\mathrm{days\_this\_year}}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\right) \\ \mathrm{m\_soil} = \left(\mathrm{m\_soil\_m2}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\right) \\ \mathrm{a} = \mathrm{pin}+\mathrm{kf}\cdot \mathrm{m\_soil}\cdot \mathrm{epc0} \\ \mathrm{bV} = \mathrm{kf}\cdot \mathrm{m\_soil}+\mathrm{q}\cdot \mathrm{days} \\ \mathrm{b} = \frac{\mathrm{bV}}{\mathrm{last}\left(\mathrm{water}\right)} \\ \mathrm{sorp} = \mathrm{kf}\cdot \mathrm{m\_soil}\cdot \left(\frac{1}{\mathrm{bV}}\cdot \left(\mathrm{a}+\left(\mathrm{last}\left(\mathrm{water}.\mathrm{phos}\right)-\frac{\mathrm{a}}{\mathrm{b}}\right)\cdot \left(1-e^{-\mathrm{b}}\right)\right)-\mathrm{epc0}\right) \\ \mathrm{last}\left(\mathrm{plab}\right)+\mathrm{sorp}\end{pmatrix} & \text{if}\;\mathrm{dyn\_epc0} \\ \mathrm{last}\left(\mathrm{plab}\right) & \text{otherwise}\end{cases}\]Initial value:
\[\left(\mathrm{init\_soil\_p\_conc}-\mathrm{inactive\_soil\_p\_conc}\right)\cdot \mathrm{m\_soil\_m2}\]Labile P concentration
Location: soil.plab.plabconc
Unit: mg kg⁻¹
Value:
\[\frac{\mathrm{plab}}{\mathrm{m\_soil\_m2}}\]Groundwater DIP
Location: gw.water.phos
Unit: kg km⁻²
Conc. unit: mg l⁻¹
Value (concentration):
\[\mathrm{gw\_tdp}\]Initial value (concentration):
\[\mathrm{gw\_tdp}\]River DIP
Location: river.water.phos
Unit: kg
Conc. unit: mg l⁻¹
Initial value (concentration):
\[\mathrm{gw\_tdp}\]River PP
Location: river.water.sed.phos
Unit: kg
PP mobilization factor
Location: soil.plab.pp_fact
Unit: kg km⁻² day⁻¹
Value:
\[\left(\left(\mathrm{plabconc}+\mathrm{inactive\_soil\_p\_conc}\right)\cdot \mathrm{e\_fact}\cdot \mathrm{pp\_enrich}\rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\mathrm{day}^{-1}\,\right)\]River TP
Location: river.water.tp
Unit: mg l⁻¹
Value:
\[\mathrm{conc}\left(\mathrm{phos}\right)+\mathrm{conc}\left(\mathrm{sed}\right)\cdot \mathrm{conc}\left(\mathrm{sed}.\mathrm{phos}\right)\]River TDP
Location: river.water.tdp
Unit: mg l⁻¹
Value:
\[\mathrm{conc}\left(\mathrm{phos}\right)\]Fluxes
River effluent DIP
Source: out
Target: river.water.phos
Unit: kg day⁻¹
Value:
\[\mathrm{eff\_tdp}\]PP mobilization
Source: out
Target: river.water.sed.phos
Unit: kg day⁻¹
Value:
\[\mathrm{a\_catch}\cdot \mathrm{river}.\mathrm{e\_fact}\cdot \mathrm{aggregate}\left(\mathrm{soil}.\mathrm{plab}.\mathrm{pp\_fact}\right)\]SimplySed
Version: 0.6.0
File: modules/simplysed.txt
Description
This is a simple sediment transport module created as a part of SimplyP.
Erosion is computed as a product of a land erosion factor and a river erosion factor.
The land erosion factor depends on the land slope and the vegetation cover factor. The vegetation cover factor can either be be flat, or can have peaks in spring and autumn (with a user-determined proportion of the size of these peaks), representing plowing.
The erosion factor in the river follows a \((aQ)^b\) - type relationship, where Q is the total runoff from the catchment to the river.
version 0.6:
- First Mobius2 version.
- Dynamic vegetation cover is computed a bit differently.
New to version 0.5.1:
- Updated parameter doc strings
New to version 0.5:
- Replaced Q - SS input relationship aQ^b with (aQ)^b. Reduces strong correlation/covariance of a and b params.
- Moved reach slope to be a reach parameter.
- Remove need for “Arable” land class.
- Can have dynamic erodibility for all land classes and % spring-sown crops.
Authors: Leah A. Jackson-Blake, Magnus D. Norling
External symbols
| Name | Symbol | Type |
|---|---|---|
| Soil | soil | compartment |
| River | river | compartment |
| Water | water | quantity |
| Particles | sed | quantity |
| Erosion factor | e_fact | property |
| Catchment area | a_catch | par_real |
Module functions
cover_shape(doy, doy_max, len, c_cov, shp_step, shp_tri, shp_smooth) =
\[\begin{cases}\href{stdlib.html#response}{\mathrm{step\_response}}\left(\mathrm{doy},\, \mathrm{doy\_max}-\frac{\mathrm{len}}{2},\, \mathrm{doy\_max}+\frac{\mathrm{len}}{2},\, \mathrm{c\_cov},\, 1,\, \mathrm{c\_cov}\right) & \text{if}\;\mathrm{shp\_step} \\ \href{stdlib.html#response}{\mathrm{wedge\_response}}\left(\mathrm{doy},\, \mathrm{doy\_max}-\frac{\mathrm{len}}{2},\, \mathrm{doy\_max},\, \mathrm{doy\_max}+\frac{\mathrm{len}}{2},\, \mathrm{c\_cov},\, 1,\, \mathrm{c\_cov}\right) & \text{if}\;\mathrm{shp\_tri} \\ \href{stdlib.html#response}{\mathrm{bump\_response}}\left(\mathrm{doy},\, \mathrm{doy\_max}-\frac{\mathrm{len}}{2},\, \mathrm{doy\_max},\, \mathrm{doy\_max}+\frac{\mathrm{len}}{2},\, \mathrm{c\_cov},\, 1,\, \mathrm{c\_cov}\right) & \text{if}\;\mathrm{shp\_smooth} \\ \mathrm{c\_cov} & \text{otherwise}\end{cases}\]Parameters
| Name | Symbol | Unit | Description |
|---|---|---|---|
| Soil erodibility | Distributes like: soil | ||
| Vegetation cover factor | c_cov | Vegetation cover factor, describing ratio between long-term erosion under the land use class, compared to under bare soil of the same soil type, slope, etc. Source from (R)USLE literature and area-weight as necessary to obtain a single value for the land class. | |
| Day of year when soil erodibility is max for spring-grown crops | doy_spring | day | |
| Day of year when soil erodibility is max for autumn-grown crops | doy_autumn | day | |
| Proportion of spring-grown crops | p_spring | ||
| Reduction of load in sediment | loadred | ||
| Cover factor shape | shp | Possible values: flat, step, triangular, smooth | |
| Land slope | Distributes like: soil | ||
| Mean slope of land | land_slope | ° | |
| River erosion | Distributes like: river | ||
| Erosion scaling factor | ksed | day mm⁻¹ | |
| Erosion power factor | psed |
State variables
Variable reduction of load in sediments
Location: soil.loadred_var
Unit:
This series is externally defined. It may be an input series.
Suspended sediments
Location: river.water.sed
Unit: kg
Conc. unit: mg l⁻¹
Time dependent vegetation cover factor
Location: soil.c_cover
Unit:
Value:
\[\mathrm{E\_risk\_period} = 60 \mathrm{day}\, \\ \mathrm{spring} = \mathrm{cover\_shape}\left(\mathrm{time}.\mathrm{day\_of\_year},\, \mathrm{doy\_spring},\, \mathrm{E\_risk\_period},\, \mathrm{c\_cov},\, \mathrm{shp}.\mathrm{step},\, \mathrm{shp}.\mathrm{triangular},\, \mathrm{shp}.\mathrm{smooth}\right) \\ \mathrm{autumn} = \mathrm{cover\_shape}\left(\mathrm{time}.\mathrm{day\_of\_year},\, \mathrm{doy\_autumn},\, \mathrm{E\_risk\_period},\, \mathrm{c\_cov},\, \mathrm{shp}.\mathrm{step},\, \mathrm{shp}.\mathrm{triangular},\, \mathrm{shp}.\mathrm{smooth}\right) \\ \mathrm{spring}\cdot \mathrm{p\_spring}+\mathrm{autumn}\cdot \left(1-\mathrm{p\_spring}\right)\]Erosion factor land
Location: soil.e_fact
Unit: kg km⁻² day⁻¹
Value:
\[\left(\mathrm{land\_slope}\cdot \mathrm{c\_cover}\cdot \left(1-\mathrm{loadred}\right)\cdot \left(1-\mathrm{loadred\_var}\right)\Rightarrow \mathrm{kg}\,\mathrm{km}^{-2}\,\mathrm{day}^{-1}\,\right)\]Erosion factor river
Location: river.e_fact
Unit:
Value:
\[\left(\mathrm{ksed}\cdot \frac{\mathrm{in\_flux}\left(\mathrm{water}\right)}{\mathrm{a\_catch}}\rightarrow 1\right)^{\mathrm{psed}}\]Fluxes
Sediment mobilization
Source: out
Target: river.water.sed
Unit: kg day⁻¹
Value:
\[\mathrm{a\_catch}\cdot \mathrm{aggregate}\left(\mathrm{soil}.\mathrm{e\_fact}\right)\cdot \mathrm{river}.\mathrm{e\_fact}\]